AUSTRALIAN PATHOLOGY UNITS AND TERMINOLOGY (APUTS) Reporting Terminology and Codes Microbiology. (v1.0)

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1 AUSTRALIAN PATHOLOGY UNITS AND TERMINOLOGY (APUTS) Reporting Terminology and Codes Microbiology (v1.0) 1

2 12/02/2013 APUTS Report Information Model - Urine Microbiology Page 1 of 1 Specimen Specimen Type Macro Time Chemistry Glucose Bilirubin Ketones Specific Gravity ph Protein Urobilinogen Nitrites Haemoglobin Leucocyte Esterases White blood cell count Cells Red blood cells Epithelial cells Microscopy Microorganisms Casts Crystals Other elements Bacteria Parasites Yeasts Antibacterial Activity No growth Mixed growth Urine MCS No significant growth Klebsiella sp. Identification Bacteria Virus ESBL Klebsiella pneumoniae Fungi Growth of >10^8 org/l Culture LOINC Significant growth Organism 1 Colony Count LOINC Range or number 10^7 to 10^8 organism/l of mixed growth of 3 organisms >10^8 organisms/l e.g. Ampicillin LOINC Susceptibility Antibiotics Method Organism 2 Organism 3 Organism 4 None Released/suppressed Comment None Consistent with UTI Probable contamination Growth unlikely to be significant Please submit a repeat specimen for testing if clinically indicated Catheter comments Sterile pyuria Notification to infection control and public health departments PUTS Urine Microbiology Information Model v1.mmap - 12/02/ Mindjet

3 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Urine Page 1 of 3 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1 LOINC LOINC LOINC LOINC LOINC LOINC Urine Microbiology Report Component Property Timing System Scale LOINC Method Specimen Collection Method Urinalysis specimen collection method Prid Pt Urine Nom Dipstick/Chemistry Glucose Glucose ACnc Pt Urine Ord Test strip Bilirubin Bilirubin ACnc Pt Urine Ord Test strip Ketones Ketones ACnc Pt Urine Ord Test strip Specific Gravity Specific gravity Rden Pt Urine Qn Test strip ph ph LsCnc Pt Urine Qn Test strip Protein Protein ACnc Pt Urine Ord Test strip Urobilinogen Urobilinogen ACnc Pt Urine Ord Test strip Nitrites Nitrite ACnc Pt Urine Ord Test strip Haemoglobin Hemoglobin ACnc Pt Urine Ord Test strip Leucocyte Esterase Leukocyte esterase ACnc Pt Urine Ord Test strip Microscopy Cells White blood cell count Leukocytes NCnc Pt Urine Qn Red blood cell count Erythrocytes NCnc Pt Urine Qn Red blood cell morphology Erythrocyte morphology Imp Pt Urine sed Nar Microscopy.light Epithelial cells Epithelial cells NCnc Pt Urine Qn Microorganisms Bacteria Bacteria ACnc Pt Urine Ord Automated Parasites Parasites Naric Pt Urine sed Qn Microscopy.light.LPF Yeast Yeast ACnc Pt Urine sed Ord Microscopy.light Fungi Fungi.filamentous ACnc Pt Urine sed Ord Microscopy.light Casts Casts present Casts ACnc Pt Urine sed Ord Microscopy.light Casts number Casts Naric Pt Urine sed Qn Microscopy.light.LPF Casts type Casts Type Pt Urine sed Nom Microscopy.light Crystals Crystals present Crystals ACnc Pt Urine sed Ord Microscopy.light Crystals number Crystals Naric Pt Urine sed Qn Microscopy.light.HPF Crystals type Crystals Prid Pt Urine sed Nom Microscopy.light Other Prid Pt Urine sed Nom Microscopy.light Spermatozoa Spermatozoa ACnc Pt Urine sed Ord Microscopy.light Antibacterial activity Page 1 of 3

4 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Urine Page 2 of 3 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1 LOINC LOINC LOINC LOINC LOINC LOINC Urine Microbiology Report Component Property Timing System Scale Antibacterial activity Antimicrobials ACnc Pt Urine Ord LOINC Method Culture The same LOINC should be used if multiple organisms are cultured. The HL7 Sub ID (OBX-4) field can be used to distiguish organisms from each other and group relevant co Culture result/organism Bacteria identified Prid Pt Urine Nom Culture Colony count Colony count NCnc Pt Urine Qn Antimicrobial Susceptibility The LOINC terms listed below are an extract from a large selection of antimicrobial substances available. All are methodless and have the scale property of OrdQn. The OrdQn scale property allow results to be reported as as resistant, intermediate, susceptible or as the mm diam In addition to the methodless LOINC terms there are versions with the following methods: Agar diffusion, MIC, MLC (Minimum lethal concentration), SBT (Serum bactericida Antibacterials Amikacin Amikacin Susc Pt Isolate OrdQn Amoxycillin Amoxicillin Susc Pt Isolate OrdQn Ampicillin Ampicillin Susc Pt Isolate OrdQn Augmentin Amoxicillin+Clavulanate Susc Pt Isolate OrdQn Azithromycin Azithromycin Susc Pt Isolate OrdQn Aztreonam Aztreonam Susc Pt Isolate OrdQn Cefepime Cefepime Susc Pt Isolate OrdQn Cefotaxime Cefotaxime Susc Pt Isolate OrdQn Cefpirome Cefpirome Susc Pt Isolate OrdQn Ceftazidime Ceftazidime Susc Pt Isolate OrdQn Ceftriaxone Ceftriaxone Susc Pt Isolate OrdQn Cephalexin Cephalexin Susc Pt Isolate OrdQn Cephalothin Cephalothin Susc Pt Isolate OrdQn Cephazolin Cefazolin Susc Pt Isolate OrdQn Chloramphenicol Chloramphenicol Susc Pt Isolate OrdQn Ciprofloxacin Ciprofloxacin Susc Pt Isolate OrdQn Clarithromycin Clarithromycin Susc Pt Isolate OrdQn Daptomycin Daptomycin Susc Pt Isolate OrdQn Doripenem Doripenem Susc Pt Isolate OrdQn Ertapenem Ertapenem Susc Pt Isolate OrdQn Erythromycin Erythromycin Susc Pt Isolate OrdQn Flucloxacillin/ Floxacillin Susc Pt Isolate OrdQn Flucloxacillin/Dicloxacillin Dicloxacillin Susc Pt Isolate OrdQn Fosfomycin Fosfomycin Susc Pt Isolate OrdQn Fusidic acid Fusidate Susc Pt Isolate OrdQn Gentamicin Gentamicin Susc Pt Isolate OrdQn Gentamicin (high level) Gentamicin.high potency Susc Pt Isolate OrdQn Linezolid Linezolid Susc Pt Isolate OrdQn lmipenem Imipenem Susc Pt Isolate OrdQn Page 2 of 3

5 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Urine Page 3 of 3 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1 Urine Microbiology Report LOINC LOINC LOINC LOINC LOINC LOINC Component Property Timing System Scale Meropenem Meropenem Susc Pt Isolate OrdQn Methicillin Methicillin Susc Pt Isolate OrdQn Metronidazole Metronidazole Susc Pt Isolate OrdQn Moxifloxacin Moxifloxacin Susc Pt Isolate OrdQn Mupirocin Mupirocin Susc Pt Isolate OrdQn Nitrofurantoin Nitrofurantoin Susc Pt Isolate OrdQn Norfloxacin Norfloxacin Susc Pt Isolate OrdQn Penicillin Penicillin Susc Pt Isolate OrdQn Piperacillin Piperacillin Susc Pt Isolate OrdQn Polymyxin B (Colistin) Polymyxin B Susc Pt Isolate OrdQn Quinupristin/Dalfopristin (Synercid) Quinupristin+Dalfopristin Susc Pt Isolate OrdQn Rifampicin Rifampin Susc Pt Isolate OrdQn Streptomycin (high level) Streptomycin.high potency Susc Pt Isolate OrdQn Tazocin Piperacillin+Tazobactam Susc Pt Isolate OrdQn Teicoplanin Teicoplanin Susc Pt Isolate OrdQn Tetracycline Tetracycline Susc Pt Isolate OrdQn Tigecycline Tigecycline Susc Pt Isolate OrdQn Timentin Ticarcillin+Clavulanate Susc Pt Isolate OrdQn Tobramycin Tobramycin Susc Pt Isolate OrdQn Trimethoprim Trimethoprim Susc Pt Isolate OrdQn Vancomycin Vancomycin Susc Pt Isolate OrdQn LOINC Method Antifungals Amphotericin B Amphotericin B Susc Pt Isolate OrdQn 15 Flucytosine Fluorocytosine Susc Pt Isolate OrdQn Fluconazole Fluconazole Susc Pt Isolate OrdQn Itraconazole Itraconazole Susc Pt Isolate OrdQn Others ESBL Beta lactamase.extended spectrum Susc Pt Isolate OrdQn Metallo Beta lactamase No LOINC Notifying Infection / Public Health departments Public health notifiable condition Prid Pt XXX Nom General health Find Pt ^Patient Nom Reported Page 3 of 3

6 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Serology and Molecular Page 1 of 6 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Alphavirus group Any No Unit Alphavirus RNA ACnc Pt XXX Ord Probe.amp.tar Bacillus anthracis DNA Any No Unit Bacillus anthracis DNA ACnc Pt XXX Ord Probe.amp.tar Bacterial 16S rrna Any No Unit Bacterial 16S rrna sequencing Prid Pt XXX Nom Barmah Forest virus IgG Ab Blood/Serum No Unit Barmah forest virus Ab.IgG ACnc Pt Ser Ord Barmah Forest virus IgM Ab Blood/Serum No Unit Barmah forest virus Ab.IgM ACnc Pt Ser Ord Bartonella henselae DNA Any No Unit Bartonella henselae DNA ACnc Pt XXX Ord Probe.amp.tar Bartonella quintana DNA Any No Unit Bartonella quintana DNA ACnc Pt XXX Ord Probe.amp.tar BK virus DNA For qualitative reporting Any No Unit BK virus DNA ACnc Pt XXX Ord Probe.amp.tar BK virus DNA For quantitative reporting in international units/ml Any IU/mL BK virus DNA ACnc Pt XXX Qn Probe.amp.tar BK virus DNA For quantitative reporting in log copies/ml Any log copies/ml BK virus DNA LnCnc Pt XXX Qn Probe.amp.tar BK virus DNA For quantitative reporting in copies/ml Any copies/ml BK virus DNA NCnc Pt XXX Qn Probe.amp.tar Bordetella pertussis DNA Any No Unit Bordetella pertussis DNA ACnc Pt XXX Ord Probe.amp.tar Bordetella pertussis IgA Ab Blood/Serum No Unit Bordetella pertussis Ab.IgA ACnc Pt Ser Ord Bordetella pertussis IgG Ab For qualitative reporting Blood/Serum No Unit Bordetella pertussis Ab.IgG ACnc Pt Ser Ord Bordetella pertussis IgG Ab Blood/Serum U/mL Bordetella pertussis Ab.IgG ACnc Pt Ser Qn Bordetella pertussis IgM Ab Blood/Serum No Unit Bordetella pertussis Ab.IgM ACnc Pt Ser Ord Bordetella pertussis toxin IgA Ab Blood/Serum IU/mL Bordetella pertussis.toxin Ab.IgA ACnc Pt Ser Qn Bordetella pertussis toxin IgG Ab Blood/Serum IU/mL Bordetella pertussis.toxin Ab.IgG ACnc Pt Ser Qn Bordetella pertussis toxin IgM Ab Blood/Serum??? Bordetella pertussis.toxin Ab.IgM ACnc Pt Ser Qn Brucella Ab For use with agglutination assay Blood/Serum titre Brucella sp Ab Titr Pt Ser Qn Aggl Brucella Ab For use with complement fixation test Blood/Serum titre Brucella abortus Ab Titr Pt Ser Qn Comp fix Brucella IgG Ab Blood/Serum No Unit Brucella sp Ab.IgG ACnc Pt Ser Ord Brucella IgM Ab Blood/Serum No Unit Brucella sp Ab.IgM ACnc Pt Ser Ord Chikungunya virus RNA Any No Unit Chikungunya virus RNA ACnc Pt XXX Ord Probe.amp.tar Chikungunya virus Total Ab Blood/Serum titre Chikungunya virus Ab Titr Pt Ser Qn Chlamydia sp IgA Ab Blood/Serum No Unit Chlamydia sp Ab.IgA ACnc Pt Ser Ord Chlamydia sp IgG Ab Blood/Serum No Unit Chlamydia sp Ab.IgG ACnc Pt Ser Ord Chlamydia sp IgM Ab Blood/Serum No Unit Chlamydia sp Ab.IgM ACnc Pt Ser Ord Chlamydia sp total Ab Blood/Serum No Unit Chlamydia sp Ab ACnc Pt Ser Ord Chlamydia trachomatis DNA Any No Unit Chlamydia trachomatis DNA ACnc Pt XXX Ord Probe.amp.tar Chlamydia trachomatis IgA Ab Blood/Serum No Unit Chlamydia trachomatis Ab.IgA ACnc Pt Ser Ord Chlamydia trachomatis IgG Ab Blood/Serum No Unit Chlamydia trachomatis Ab.IgG ACnc Pt Ser Ord Chlamydia trachomatis IgM Ab Blood/Serum No Unit Chlamydia trachomatis Ab.IgM ACnc Pt Ser Ord Chlamydia trachomatis L2 DNA) Lymphogranuloma venerum Any No Unit Chlamydia trachomatis L2 DNA ACnc Pt XXX Ord Probe.amp.tar Chlamydia trachomatis total Ab Blood/Serum titre Chlamydia trachomatis Ab Titr Pt Ser Qn Chlamydia trachomatis total Ab For qualitative reporting other than immunofluoresence methods Blood/Serum No Unit Chlamydia trachomatis Ab ACnc Pt Ser Ord Chlamydia trachomatis total Ab For qualitative reporting with immunofluoresence methodsmethods Any No Unit Chlamydia trachomatis Ag ACnc Pt XXX Ord IF Chlamydophila pneumoniae IgA Ab Chlamydia pneumoniae IgA Ab For qualitative reporting Blood/Serum No Unit Chlamydophila pneumoniae Ab.IgA ACnc Pt Ser Ord Chlamydophila pneumoniae IgA Ab Blood/Serum titre Chlamydophila pneumoniae Ab.IgA Titr Pt Ser Qn Chlamydophila pneumoniae IgG Ab For qualitative reporting Blood/Serum No Unit Chlamydophila pneumoniae Ab.IgG ACnc Pt Ser Ord Chlamydophila pneumoniae IgG Ab Blood/Serum titre Chlamydophila pneumoniae Ab.IgG Titr Pt Ser Qn Chlamydophila pneumoniae IgM Ab For qualitative reporting Blood/Serum No Unit Chlamydophila pneumoniae Ab.IgM ACnc Pt Ser Ord Chlamydophila pneumoniae IgM Ab Blood/Serum titre Chlamydophila pneumoniae Ab.IgM Titr Pt Ser Qn Chlamydophila pneumoniae Total Ab Blood/Serum titre Chlamydophila pneumoniae Ab Titr Pt Ser Qn Chlamydophila psittaci Total Ab Chlamydia psittaci Total Ab Blood/Serum titre Chlamydophila psittaci Ab Titr Pt Ser Qn Clostridium difficile DNA Any No Unit Clostridium difficile DNA ACnc Pt XXX Ord Probe.amp.tar Clostridium difficile glutamate dehydrogenase Stool No Unit Clostridium difficile glutamate dehydrogenase ACnc Pt Stool Ord Clostridium difficile toxin A+B Stool No Unit Clostridium difficile toxin A+B ACnc Pt Stool Ord Clostridium difficile toxin genes faeces For molecular assay Stool No Unit Clostridium difficile toxin genes ACnc Pt Stool Ord Probe.amp.tar Cryptococcus Ag Blood/Serum No Unit Cryptococcus sp Ag ACnc Pt Ser Ord Cryptococcus Ag Blood/Serum titre Cryptococcus sp Ag Titr Pt Ser Qn Cryptococcus Ag CSF CSF No Unit Cryptococcus sp Ag ACnc Pt CSF Ord Cryptococcus Ag CSF CSF titre Cryptococcus sp Ag Titr Pt CSF Qn LA Cytomegalovirus Ab IgG avidity Blood/Serum % Cytomegalovirus Ab.IgG avidity Ratio Pt Ser Qn EIA Cytomegalovirus DNA For qualitative reporting Any No Unit Cytomegalovirus DNA ACnc Pt XXX Ord Probe.amp.tar Cytomegalovirus DNA For quantitative reporting in log copies/ml Any log copies/ml Cytomegalovirus DNA LnCnc Pt XXX Qn Probe.amp.tar Cytomegalovirus DNA For quantitative reporting in copies/ml Any copies/ml Cytomegalovirus DNA NCnc Pt XXX Qn Probe.amp.tar Cytomegalovirus IgG Ab For qualitative reporting Blood/Serum No Unit Cytomegalovirus Ab.IgG ACnc Pt Ser Ord Cytomegalovirus IgG Ab Blood/Serum U/mL Cytomegalovirus Ab.IgG ACnc Pt Ser Qn Cytomegalovirus IgM Ab For qualitative reporting Blood/Serum No Unit Cytomegalovirus Ab.IgM ACnc Pt Ser Ord Cytomegalovirus IgM Ab For quantitative reporting in titres Blood/Serum titre Cytomegalovirus Ab.IgM Titr Pt Ser Qn Cytomegalovirus IgM Ab For quantitative reporting in units/ml Blood/Serum U/mL Cytomegalovirus Ab.IgM ACnc Pt Ser Qn Cytomegalovirus Total Ab Blood/Serum titre Cytomegalovirus Ab Titr Pt Ser Qn Dengue virus 1 RNA Blood/Serum No Unit Dengue virus 1 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 2 RNA Blood/Serum No Unit Dengue virus 2 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 3 RNA Blood/Serum No Unit Dengue virus 3 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus 4 RNA Blood/Serum No Unit Dengue virus 4 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus group RNA Blood/Serum No Unit Dengue virus 1, 2, 3, 4 RNA ACnc Pt Ser Ord Probe.amp.tar Dengue virus IgG Ab Blood/Serum No Unit Dengue virus Ab.IgG ACnc Pt Ser Ord Dengue virus IgM Ab Blood/Serum No Unit Dengue virus Ab.IgM ACnc Pt Ser Ord Dengue virus IgM Ab Blood/Serum titre Dengue virus Ab.IgM Titr Pt Ser Qn Dengue virus NS1 Ag Blood/Serum No Unit Dengue virus Ag ACnc Pt Ser Ord Dengue virus total Ab Blood/Serum titre Dengue virus Ab Titr Pt Ser Qn Page 1 of 6

7 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Serology and Molecular Page 2 of 6 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Entamoeba histolytica Ab Blood/Serum titre Entamoeba histolytica Ab Titr Pt Ser Qn Enterovirus RNA Any No Unit Enterovirus RNA ACnc Pt XXX Ord Probe.amp.tar Enterovirus subtype RNA Any No Unit Enterovirus subtype Type Pt XXX Nom Probe.amp.tar Epstein Barr virus virus capsid Ab IgG EBV VCA IgG For quantitative reporting in units/ml Blood/Serum U/mL Epstein Barr virus capsid Ab.IgG ACnc Pt Ser Qn Epstein Barr virus virus capsid Ab IgM EBV VCA IgM Blood/Serum No Unit Epstein Barr virus capsid Ab.IgM ACnc Pt Ser Ord Epstein Barr virus virus capsid Ab IgM EBV VCA IgM Blood/Serum titre Epstein Barr virus capsid Ab.IgM Titr Pt Ser Qn Epstein Barr virus virus capsid Ab IgM EBV VCA IgM Blood/Serum U/mL Epstein Barr virus capsid Ab.IgM ACnc Pt Ser Qn Epstein Barr virus early Ab IgA EBV EA IgA Blood/Serum titre Epstein Barr virus early Ab.IgA Titr Pt Ser Qn Epstein Barr virus early Ab IgG EBV EA IgG Blood/Serum No Unit Epstein Barr virus early Ab.IgG ACnc Pt Ser Ord Epstein Barr virus nuclear Ab IgG EBNA IgG For qualitative reporting Blood/Serum No Unit Epstein Barr virus nuclear Ab.IgG ACnc Pt Ser Ord Epstein Barr virus nuclear Ab IgG EBNA IgG Blood/Serum U/mL Epstein Barr virus nuclear Ab.IgG ACnc Pt Ser Qn Epstein Barr virus nuclear Ab IgM EBNA IgM Blood/Serum No Unit Epstein Barr virus nuclear Ab.IgM ACnc Pt Ser Ord Epstein Barr virus virus capsid Ab IgG EBV VCA IgG For qualitative reporting Blood/Serum No Unit Epstein Barr virus capsid Ab.IgG ACnc Pt Ser Ord Epstein Barr virus virus capsid Ab IgG EBV VCA IgG For quantitative reporting in titres Blood/Serum titre Epstein Barr virus capsid Ab.IgG Titr Pt Ser Qn Flavivirus Group RNA Any No Unit Flavivirus RNA ACnc Pt XXX Ord Probe.amp.tar Francisella tularensis DNA Any No Unit Francisella tularensis DNA ACnc Pt XXX Ord Probe.amp.tar Helicobacter pylori IgA Ab For qualitative reporting Blood/Serum No Unit Helicobacter pylori Ab.IgA ACnc Pt Ser Ord Helicobacter pylori IgA Ab Blood/Serum U/mL Helicobacter pylori Ab.IgA ACnc Pt Ser Qn Helicobacter pylori IgG Ab For qualitative reporting Blood/Serum No Unit Helicobacter pylori Ab.IgG ACnc Pt Ser Ord Helicobacter pylori IgG Ab Blood/Serum U/mL Helicobacter pylori Ab.IgG ACnc Pt Ser Qn Helicobacter pylori Total Ab For qualitative reporting Blood/Serum No Unit Helicobacter pylori Ab ACnc Pt Ser Ord Helicobacter pylori Total Ab Blood/Serum U/mL Helicobacter pylori Ab ACnc Pt Ser Qn Hepatitis A IgG Ab Blood/Serum No Unit Hepatitis A virus Ab.IgG ACnc Pt Ser Ord Hepatitis A IgM Ab Blood/Serum No Unit Hepatitis A virus Ab.IgM ACnc Pt Ser Ord Hepatitis A Total Ab Blood/Serum No Unit Hepatitis A virus Ab ACnc Pt Ser Ord Hepatitis B core Ab Blood/Serum No Unit Hepatitis B virus core Ab ACnc Pt Ser Ord Hepatitis B core IgM Ab Blood/Serum No Unit Hepatitis B virus core Ab.IgM ACnc Pt Ser Ord Hepatitis B e Ab Blood/Serum No Unit Hepatitis B virus little e Ab ACnc Pt Ser Ord Hepatitis B e Ag Blood/Serum No Unit Hepatitis B virus little e Ag ACnc Pt Ser Ord Hepatitis B surface Ab Blood/Serum IU/L Hepatitis B virus surface Ab ACnc Pt Ser Qn Hepatitis B surface Ag Blood/Serum IU/mL Hepatitis B virus surface Ag ACnc Pt Ser Qn Hepatitis B surface Ag For qualitative reporting Blood/Serum No Unit Hepatitis B virus surface Ag ACnc Pt Ser Ord Hepatitis B Surface Ag Use as supplementary assay Blood/Serum No Unit Hepatitis B virus surface Ag ACnc Pt Ser Ord Confirm Hepatitis B Surface Ag Use as supplementary assay - neutralisation Blood/Serum No Unit Hepatitis B virus surface Ag ACnc Pt Ser Ord Neut Hepatitis B virus DNA For qualitative reporting Blood/Serum No Unit Hepatitis B virus DNA ACnc Pt Ser/Plas Ord Probe.amp.tar Hepatitis B virus DNA For quantitative reporting in international units/ml Blood/Serum IU/mL Hepatitis B virus DNA ACnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis B virus DNA For quantitative reporting in log international units/ml Blood/Serum log IU/mL Hepatitis B virus DNA LaCnc Pt XXX Qn Probe.amp.tar Hepatitis B virus DNA fluid For qualitative reporting Any No Unit Hepatitis B virus DNA ACnc Pt XXX Ord Probe.amp.tar Hepatitis B virus DNA fluid For quantitative reporting in log international units/ml Any log IU/mL Hepatitis B virus DNA LaCnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis B virus DNA fluid For quantitative reporting in international units/ml Any IU/mL Hepatitis B virus DNA ACnc Pt XXX Qn Probe.amp.tar Hepatitis C Ab Use for screening and supplementary tests Blood/Serum No Unit Hepatitis C virus Ab ACnc Pt Ser Ord Hepatitis C Ab immunoblot Use as supplementary test - immunoblot Blood/Serum No Unit Hepatitis C virus Ab ACnc Pt Ser Ord IB Hepatitis C Ag Blood/Serum pg/ml Hepatitis C virus Ag ACnc Pt Ser Qn EIA Hepatitis C virus Genotyping Blood/Serum No Unit Hepatitis C virus genotype Prid Pt Ser/Plas Nom Probe.amp.tar Hepatitis C virus RNA Blood/Serum No Unit Hepatitis C virus RNA ACnc Pt Ser/Plas Ord Probe.amp.tar Hepatitis C virus RNA For quantitative reporting in international units/ml Blood/Serum IU/mL Hepatitis C virus RNA ACnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis C virus RNA For quantitative reporting in log international units/ml Blood/Serum log IU/mL Hepatitis C virus RNA LaCnc Pt Ser/Plas Qn Probe.amp.tar Hepatitis C virus RNA fluid Any No Unit Hepatitis C virus RNA ACnc Pt XXX Ord Probe.amp.tar Hepatitis D D Ag Blood/Serum No Unit Hepatitis D virus Ag ACnc Pt Ser Ord Hepatitis D IgM Ab Blood/Serum No Unit Hepatitis D virus Ab.IgM ACnc Pt Ser Ord Hepatitis D Total Ab Blood/Serum No Unit Hepatitis D virus Ab ACnc Pt Ser Ord Hepatitis E IgG Ab Blood/Serum No Unit Hepatitis E virus Ab.IgG ACnc Pt Ser Ord Hepatitis E IgM Ab Blood/Serum No Unit Hepatitis E virus Ab.IgM ACnc Pt Ser Ord Hepatitis E Total Ab Blood/Serum No Unit Hepatitis E virus Ab ACnc Pt Ser Ord Herpes simplex 1 IgG Ab For qualitative reporting Blood/Serum No Unit Herpes simplex virus 1 Ab.IgG ACnc Pt Ser Ord Herpes simplex 1 IgG Ab For quantitative reporting in units/ml Blood/Serum U/mL Herpes simplex virus 1 Ab.IgG ACnc Pt Ser Qn Herpes simplex 1 IgM Ab For qualitative reporting Blood/Serum No Unit Herpes simplex virus 1 Ab.IgM ACnc Pt Ser Ord Herpes simplex 1 IgM Ab For quantitative reporting in titre Blood/Serum titre Herpes simplex virus 1 Ab.IgM Titr Pt Ser Qn Herpes simplex 1 IgM Ab For quantitative reporting in units/ml Blood/Serum U/mL Herpes simplex virus 1 Ab.IgM ACnc Pt Ser Qn Herpes simplex 2 IgG Ab For qualitative reporting Blood/Serum No Unit Herpes simplex virus 2 Ab.IgG ACnc Pt Ser Ord Herpes simplex 2 IgG Ab For quantitative reporting in titre Blood/Serum titre Herpes simplex virus 2 Ab.IgG Titr Pt Ser Qn Herpes simplex 2 IgG Ab For quantitative reporting in units/ml Blood/Serum U/mL Herpes simplex virus 2 Ab.IgG ACnc Pt Ser Qn Herpes simplex 2 IgM Ab For qualitative reporting Blood/Serum No Unit Herpes simplex virus 2 Ab.IgM ACnc Pt Ser Ord Herpes simplex 2 IgM Ab For quantitative reporting in titre Blood/Serum titre Herpes simplex virus 2 Ab.IgM Titr Pt Ser Qn Herpes simplex 2 IgM Ab For quantitative reporting in units/ml Blood/Serum U/mL Herpes simplex virus 2 Ab.IgM ACnc Pt Ser Qn Herpes simplex 1 & 2 IgG Ab For quantitative reporting in units/ml Blood/Serum U/mL Herpes simplex virus 1, 2 Ab.IgG ACnc Pt Ser Qn Herpes simplex 1 & 2 IgG Ab For quantitative reporting in titre Blood/Serum titre Herpes simplex virus 1, 2 Ab.IgG Titr Pt Ser Qn Herpes simplex 1 & 2 IgG Ab For qualitative reporting Blood/Serum No Unit Herpes simplex virus 1, 2 Ab.IgG ACnc Pt Ser Ord Herpes simplex 1 & 2 IgM Ab For qualitative reporting Blood/Serum No Unit Herpes simplex virus 1, 2 Ab.IgM ACnc Pt Ser Ord Herpes simplex 1 & 2 IgM Ab For quantitative reporting in titre Blood/Serum titre Herpes simplex virus 1, 2 Ab.IgM Titr Pt Ser Qn Herpes simplex 1 & 2 IgM Ab For quantitative reporting in units/ml Blood/Serum U/mL Herpes simplex virus 1, 2 Ab.IgM ACnc Pt Ser Qn Herpes simplex Virus 1 & 2 total Ab For qualitative reporting Blood/Serum No Unit Herpes simplex virus Ab ACnc Pt Ser Ord Herpes simplex Virus 1 & 2 total Ab For qualitative reporting with immunoblot Blood/Serum No Unit Herpes simplex virus Ab ACnc Pt Ser Ord IB Herpes simplex Virus 1 & 2 total Ab For quantitative reporting in titre Blood/Serum titre Herpes simplex virus Ab Titr Pt Ser Qn Herpes simplex Virus 1 & 2 total Ab For quantitative reporting in units/ml Blood/Serum U/mL Herpes simplex virus Ab ACnc Pt Ser Qn Herpes simplex Virus 1 & 2 total Ab CSF CSF titre Herpes simplex virus Ab Titr Pt CSF Qn Page 2 of 6

8 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Serology and Molecular Page 3 of 6 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Herpes simplex virus type 1 DNA fluid Any No Unit Herpes simplex virus 1 DNA ACnc Pt XXX Ord Probe.amp.tar Herpes simplex virus type 2 DNA fluid Any No Unit Herpes simplex virus 2 DNA ACnc Pt XXX Ord Probe.amp.tar HIV 1 gp41 band With western blot method Blood/Serum No Unit HIV 1 gp41 Ab ACnc Pt Ser Ord IB HIV 1 p15 band With western blot method Blood/Serum No Unit HIV 1 p15 Ab ACnc Pt Ser Ord IB HIV 1 p17 band With western blot method Blood/Serum No Unit HIV 1 p17 Ab ACnc Pt Ser Ord IB HIV 1 p17, p18 bands With western blot method Blood/Serum No Unit HIV 1 p17, p18 Ab ACnc Pt Ser Ord IB HIV 1 p18 band With western blot method Blood/Serum No Unit HIV 1 p18 Ab ACnc Pt Ser Ord IB HIV 1 p24 band With western blot method Blood/Serum No Unit HIV 1 p24 Ab ACnc Pt Ser Ord IB HIV 1 p31 band With western blot method Blood/Serum No Unit HIV 1 p31 Ab ACnc Pt Ser Ord IB HIV 1 p32 band With western blot method Blood/Serum No Unit HIV 1 p31, p32 Ab ACnc Pt Ser Ord IB HIV 1 p40 band With western blot method Blood/Serum No Unit HIV 1 p40 Ab ACnc Pt Ser Ord IB HIV 1 p51 band With western blot method Blood/Serum No Unit HIV 1 p51 Ab ACnc Pt Ser Ord IB HIV 1 p53 band With western blot method Blood/Serum No Unit HIV 1 p53 Ab ACnc Pt Ser Ord IB HIV 1 p55 band With western blot method Blood/Serum No Unit HIV 1 p55 Ab ACnc Pt Ser Ord IB HIV 1 p66 band With western blot method Blood/Serum No Unit HIV 1 p66 Ab ACnc Pt Ser Ord IB HIV 1 p68 band With western blot method Blood/Serum No Unit HIV 1 p68 Ab ACnc Pt Ser Ord IB HIV 1 Ag confirmatory Test Blood/Serum No Unit HIV 1 p24 Ag ACnc Pt Ser Ord Neut HIV 1 confirmatory test With western blot method Blood/Serum No Unit HIV 1 Ab band pattern Imp Pt Ser Nom IB HIV 1 gp120 band With western blot method Blood/Serum No Unit HIV 1 gp120 Ab ACnc Pt Ser Ord IB HIV 1 gp160 band With western blot method Blood/Serum No Unit HIV 1 gp160 Ab ACnc Pt Ser Ord IB HIV 1 RNA For specimens other than blood Any log copies/ml HIV 1 RNA LnCnc Pt XXX Qn Probe.amp.tar HIV 1 RNA Blood/Serum copies/ml HIV 1 RNA NCnc Pt Ser/Plas Qn Probe.amp.tar HIV 1 RNA For specimens other than blood Any copies/ml HIV 1 RNA NCnc Pt XXX Qn Probe.amp.tar HIV 2 confirmatory test With western blot method Blood/Serum No Unit HIV 2 Ab band pattern Imp Pt Ser Nom IB HIV 2 gp36 band With western blot method Blood/Serum No Unit HIV 2 gp36 Ab ACnc Pt Ser Ord IB HIV 2 RNA Quantitative With western blot method Blood/Serum IU/mL HIV 2 RNA ACnc Pt Ser/Plas Qn Probe.amp.tar HIV Ab Blood/Serum No Unit HIV 1, O, 2 Ab ACnc Pt Ser/Plas Ord HIV Ag Rapid tests Blood/Serum No Unit HIV 1 Ag ACnc Pt Ser Ord HIV Ag/Ab Combination Blood/Serum No Unit HIV 1, 2 Ab, HIV1 p24 Ag ACnc Pt Ser Ord EIA HIV p24 Ag Blood/Serum pg/ml HIV 1 p24 Ag MCnc Pt Ser Qn EIA HIV p24 Ag Blood/Serum No Unit HIV 1 p24 Ag ACnc Pt Ser Ord HIV2 Ab Blood/Serum No Unit HIV 2 Ab ACnc Pt Ser Ord HTLV Ab Blood/Serum No Unit HTLV 1, 2 Ab ACnc Pt Ser Ord HTLV Ab Supplementary test with immunoblot Blood/Serum No Unit HTLV 1, 2 Ab ACnc Pt Ser Ord IB Human Papilloma virus DNA Any No Unit Human papilloma virus DNA ACnc Pt XXX Ord Probe.amp.sig Human Papilloma virus Genotyping Any No Unit Human papilloma virus genotype Prid Pt XXX Nom Probe.amp.tar For use with Digene method detecting high risk types 16, 18, 31, 33, Human Papilloma virus high risk type DNA 35, 39, 45, 51, 52, 56, 58, 59 and 68 Cervical No Unit Human papilloma virus 16, 18, 31, 33, 35, 39, 45, 51, 52, 56 ACnc Pt Cvx Ord Probe.amp.sig Human Papilloma virus high risk type DNA For use with Roche Cobas 4800 Human Papilloma virus assay detecting high risk types 31, 33, 35, 39, 45, 51, 52, 56,58, 59, 66 and 68 Cervical No Unit Human papilloma virus 31, 33, 35, 39, 45, 51, 52, 56, 58, 59Threshold Pt Cvx Ord Probe.amp.tar Human Papilloma virus type 16 DNA Cervical No Unit Human papilloma virus 16 DNA ACnc Pt Cvx Ord Probe.amp.sig Human Papilloma virus type 18 DNA Cervical No Unit Human papilloma virus 18 DNA ACnc Pt Cvx Ord Probe.amp.sig Hydatid total Ab For qualitative reporting Blood/Serum No Unit Echinococcus sp Ab ACnc Pt Ser Ord Hydatid total Ab Blood/Serum titre Echinococcus sp Ab Titr Pt Ser Qn Influenza A Ag For qualitative reporting with immunochromatographic test Any No Unit Influenza virus A Ag ACnc Pt XXX Ord Influenza A Ag For qualitative reporting with immunofluorescence method Any No Unit Influenza virus A Ag ACnc Pt XXX Ord IF Influenza A IgA Ab Blood/Serum No Unit Influenza virus A Ab.IgA ACnc Pt Ser Ord Influenza A IgG Ab Blood/Serum No Unit Influenza virus A Ab.IgG ACnc Pt Ser Ord Influenza A IgM Ab Blood/Serum No Unit Influenza virus A Ab.IgM ACnc Pt Ser Ord Influenza A RNA Any No Unit Influenza virus A RNA ACnc Pt XXX Ord Probe.amp.tar Influenza A Subtype Any No Unit Influenza virus A subtype Prid Pt XXX Nom Probe.amp.tar Influenza A total Ab For qualitative reporting Blood/Serum No Unit Influenza virus A Ab ACnc Pt Ser Ord Influenza A total Ab For quantitative reporting with complement fixation method Blood/Serum titre Influenza virus A Ab Titr Pt Ser Qn Comp fix Influenza A total Ab For quantitative reporting with complement fixation method Blood/Serum titre Influenza virus A Ab Titr Pt Ser Qn HAI Influenza A total Ab For quantitative reporting with methods other than hemagglutination inhibition assay or complement fixation method Blood/Serum titre Influenza virus A Ab Titr Pt Ser Qn Influenza B Ag For qualitative reporting with complement fixation method Any No Unit Influenza virus B Ag ACnc Pt XXX Ord Influenza B Ag For qualitative reporting with immunofluorescence method Any No Unit Influenza virus B Ag ACnc Pt XXX Ord IF Influenza B IgA Ab Blood/Serum No Unit Influenza virus B Ab.IgA ACnc Pt Ser Ord Influenza B IgG Ab Blood/Serum No Unit Influenza virus B Ab.IgG ACnc Pt Ser Ord Influenza B IgM Ab Blood/Serum No Unit Influenza virus B Ab.IgM ACnc Pt Ser Ord Influenza B RNA Any No Unit Influenza virus B RNA ACnc Pt XXX Ord Probe.amp.tar Influenza B Total Blood/Serum No Unit Influenza virus B Ab ACnc Pt Ser Ord Influenza B Total Complement Fixation For quantitative reporting with complement fixation method Blood/Serum titre Influenza virus B Ab Titr Pt Ser Qn Comp fix Influenza B Total HAI For quantitative reporting with complement fixation method Blood/Serum titre Influenza virus B Ab Titr Pt Ser Qn HAI Influenza B Total Methodless For quantitative reporting with methods other than hemagglutination inhibition assay or complement fixation method Blood/Serum titre Influenza virus B Ab Titr Pt Ser Qn Interferon gamma release assay For use with assays like QuantiFERON -TB Blood/Serum No Unit Mycobacterium tuberculosis tuberculin stimulated gamma ACnc Pt Bld Ord Japanese encephalitis virus RNA Any No Unit Japanese encephalitis virus RNA ACnc Pt XXX Ord Probe.amp.tar JC virus DNA Any No Unit JC virus DNA ACnc Pt XXX Ord Probe.amp.tar Legionella Ag Urine pneumophilla 1 specific assay Urine No Unit Legionella pneumophila 1 Ag ACnc Pt Urine Ord Page 3 of 6

9 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Serology and Molecular Page 4 of 6 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Legionella longbeachae 1 IgM Ab Blood/Serum No Unit Legionella longbeachae 1 Ab.IgM ACnc Pt Ser Ord Legionella longbeachae 2 IgM Ab For qualitative reporting Blood/Serum No Unit Legionella longbeachae 2 Ab.IgM ACnc Pt Ser Ord Legionella longbeachae total Ab Blood/Serum No Unit Legionella longbeachae 1, 2 Ab ACnc Pt Ser Ord Legionella longbeachae total Ab Blood/Serum titre Legionella longbeachae 1, 2 Ab Titr Pt Ser Qn Legionella pneumophila 1 IgM Ab Blood/Serum titre Legionella pneumophila 1 Ab.IgM Titr Pt Ser Qn Legionella pneumophila 1 IgM Ab For qualitative reporting Blood/Serum No Unit Legionella pneumophila 1 Ab.IgM ACnc Pt Ser Ord Legionella pneumophila 1 total Ab Blood/Serum titre Legionella pneumophila 1 Ab Titr Pt Ser Qn Legionella pneumophila 1 total Ab Blood/Serum No Unit Legionella pneumophila 1 Ab ACnc Pt Ser Ord Legionella pneumophilla IgG Ab Blood/Serum titre Legionella pneumophila Ab.IgG Titr Pt Ser Qn IF Legionella pneumophilla IgM Ab Blood/Serum No Unit Legionella pneumophila 1, 2, 3, 4, 5, 6 Ab.IgM ACnc Pt Ser Ord Legionella pneumophilla Total Ab Blood/Serum titre Legionella pneumophila Ab Titr Pt Ser Qn IF Legionella sp IgG Ab Blood/Serum No Unit Legionella sp Ab.IgG ACnc Pt Ser Ord Legionella sp IgM Ab Blood/Serum titre Legionella sp Ab.IgM Titr Pt Ser Qn Legionella sp total Ab Blood/Serum titre Legionella sp Ab Titr Pt Ser Qn Leptospira borgpetersenii serovar Ballum Ab Serum titre Leptospira borgpetersenii serovar Ballum Ab Titr Pt Ser Qn Leptospira borgpetersenii serovar Tarrasovi Ab Blood/Serum titre Leptospira borgpetersenii serovar Tarrasovi Ab Titr Pt Ser Qn Leptospira interrogans Ab Blood/Serum titre Leptospira interrogans Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Australis Ab Blood/Serum titre Leptospira interrogans serovar Australis Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Bataviae Ab Blood/Serum titre Leptospira interrogans serovar Bataviae Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Canicola Ab Blood/Serum titre Leptospira interrogans serovar Canicola Ab Titr Pt Ser Qn Leptospira interrogans serovar Grippotyphosa Ab Blood/Serum titre Leptospira interrogans serovar Grippotyphosa Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Hardjo Ab Blood/Serum titre Leptospira interrogans serovar Hardjo Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Icterohaemorrhagiae Ab Blood/Serum titre Leptospira interrogans serovar Icterohaemorrhagiae Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Javanica Ab Blood/Serum titre Leptospira interrogans serovar Javanica Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Pomona Ab Blood/Serum titre Leptospira interrogans serovar Pomona Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Pyrogenes Ab Blood/Serum titre Leptospira interrogans serovar Pyrogenes Ab Titr Pt Ser Qn Aggl Leptospira interrogans serovar Tarassovi Ab Blood/Serum titre Leptospira interrogans serovar Tarassovi Ab Titr Pt Ser Qn Aggl Leptospira sp IgM Ab Blood/Serum No Unit Leptospira sp Ab.IgM ACnc Pt Ser Ord Leptospira sp total Ab Blood/Serum titre Leptospira sp Ab Titr Pt Ser Qn M. tuberculosis ethambutol resistance Molecular assay for (embb) gene mutations Isolate No Unit Mycobacterium tuberculosis ethambutol resistance (embb Prid Pt Isolate Nom Probe.amp.tar M. tuberculosis isoniazid resistance Molecular assay for (katg, inha) genes mutations Any No Unit Mycobacterium tuberculosis isoniazid resistance (katg, inacnc Pt XXX Ord Probe.amp.tar M. tuberculosis rifampin resistance Molecular assay for (rpob) gene mutations Any No Unit Mycobacterium tuberculosis rifampin resistance (rpob) genacnc Pt XXX Ord Probe.amp.tar Measles IgG Ab For qualitative reporting Blood/Serum No Unit Measles virus Ab.IgG ACnc Pt Ser Ord Measles IgG Ab For quantitative reporting in titres Blood/Serum titre Measles virus Ab.IgG Titr Pt Ser Qn Measles IgG Ab For quantitative reporting in units/ml Blood/Serum IU/mL Measles virus Ab.IgG ACnc Pt Ser Qn Measles IgM Ab For qualitative reporting Blood/Serum No Unit Measles virus Ab.IgM ACnc Pt Ser Ord Measles IgM Ab Blood/Serum titre Measles virus Ab.IgM Titr Pt Ser Qn Measles Total Ab Blood/Serum titre Measles virus Ab Titr Pt Ser Qn Measles Total Ab For qualitative reporting Blood/Serum No Unit Measles virus Ab ACnc Pt Ser Ord Measles virus RNA Any No Unit Measles virus RNA ACnc Pt XXX Ord Probe.amp.tar Methicillin resistant Staphylococcus aureus DNA MRSA Molecular assays detecting meca / nuc gene Any No Unit Staphylococcus aureus.methicillin resistant DNA ACnc Pt XXX Ord Probe.amp.tar Methicillin resistant Staphylococcus DNA MRSA DNA Staphylococcus aureus.methicillin resistant DNA ACnc Pt XXX Ord Probe.amp.tar Mumps IgG Ab For qualitative reporting Blood/Serum No Unit Mumps virus Ab.IgG ACnc Pt Ser Ord Mumps IgG Ab For quantitative reporting in titres Blood/Serum titre Mumps virus Ab.IgG Titr Pt Ser Qn Mumps IgG Ab For quantitative reporting in units/ml Blood/Serum U/mL Mumps virus Ab.IgG ACnc Pt Ser Qn Mumps IgG Ab CSF CSF No Unit Mumps virus Ab.IgG ACnc Pt CSF Ord Mumps IgM Ab For qualitative reporting Blood/Serum No Unit Mumps virus Ab.IgM ACnc Pt Ser Ord Mumps IgM Ab Blood/Serum titre Mumps virus Ab.IgM Titr Pt Ser Qn Mumps IgM Ab CSF CSF No Unit Mumps virus Ab.IgM ACnc Pt CSF Ord Mumps Total Ab Blood/Serum titre Mumps virus Ab Titr Pt Ser Qn Mumps Total Ab For qualitative reporting Blood/Serum No Unit Mumps virus Ab ACnc Pt Ser Ord Mumps Total Ab CSF CSF U/mL Mumps virus Ab ACnc Pt CSF Qn Mycobacterium avium complex rrna Any No Unit Mycobacterium avium complex rrna ACnc Pt XXX Ord Probe.amp.tar Mycobacterium tuberculosis DNA Any No Unit Mycobacterium tuberculosis complex DNA ACnc Pt XXX Ord Probe.amp.tar Mycobacterium tuberculosis rrna Any No Unit Mycobacterium tuberculosis complex rrna ACnc Pt XXX Ord Probe.amp.tar Mycoplasma genitalium DNA Any No Unit Mycoplasma genitalium DNA Threshold Pt XXX Ord Probe.amp.tar Mycoplasma IgA Ab Blood/Serum No Unit Mycoplasma pneumoniae Ab.IgA ACnc Pt Ser Ord Mycoplasma IgG Ab For qualitative reporting Blood/Serum No Unit Mycoplasma pneumoniae Ab.IgG ACnc Pt Ser Ord Mycoplasma IgG Ab For quantitative reporting in titres Blood/Serum titre Mycoplasma pneumoniae Ab.IgG Titr Pt Ser Qn Mycoplasma IgG Ab For quantitative reporting in units/ml Blood/Serum U/mL Mycoplasma pneumoniae Ab.IgG ACnc Pt Ser Qn Mycoplasma IgM Ab Blood/Serum No Unit Mycoplasma pneumoniae Ab.IgM ACnc Pt Ser Ord Mycoplasma pneumoniae DNA Any No Unit Mycoplasma pneumoniae DNA ACnc Pt XXX Ord Probe.amp.tar Mycoplasma Total Ab Blood/Serum titre Mycoplasma pneumoniae Ab Titr Pt Ser Qn Neisseria gonorrhoeae DNA Any No Unit Neisseria gonorrhoeae DNA ACnc Pt XXX Ord Probe.amp.tar Neisseria gonorrhoeae RNA Any No Unit Neisseria gonorrhoeae rrna ACnc Pt XXX Ord Probe.amp.tar Neisseria meningitidis DNA Any No Unit Neisseria meningitidis DNA ACnc Pt XXX Ord Probe.amp.tar Neisseria meningitidis serogroup DNA Any No Unit Neisseria meningitidis serogroup DNA Prid Pt XXX Nom Probe.amp.tar O.tsutsugamushi Scrub Typhus total Ab Blood/Serum titre Orientia tsutsugamushi Ab Titr Pt Ser Qn Parvovirus B19 DNA Any No Unit Parvovirus B19 DNA ACnc Pt XXX Ord Probe.amp.tar Parvovirus IgG Ab Blood/Serum titre Parvovirus B19 Ab.IgG Titr Pt Ser Qn Parvovirus IgG Ab For qualitative reporting Blood/Serum No Unit Parvovirus B19 Ab.IgG ACnc Pt Ser Ord Parvovirus IgM Ab Blood/Serum titre Parvovirus B19 Ab.IgM Titr Pt Ser Qn Parvovirus IgM Ab For qualitative reporting Blood/Serum No Unit Parvovirus B19 Ab.IgM ACnc Pt Ser Ord Pneumocystis jiroveci DNA For qualitative reporting Any No Unit Pneumocystis jiroveci DNA ACnc Pt XXX Ord Probe.amp.tar Pneumocystis jiroveci DNA For quantitative reporting with copies/ml Any copies/ml Pneumocystis jiroveci DNA NCnc Pt XXX Qn Probe.amp.tar Q fever DNA Coxiella burnetii Any No Unit Coxiella burnetii DNA ACnc Pt XXX Ord Probe.amp.tar Page 4 of 6

10 12/02/2013 APUTS Report Terminology and Codes - Microbiology - Serology and Molecular Page 5 of 6 RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1 Preferred term Synonym Usage guidance Specimen PUTS Unit LOINC term LOINC Component LOINC Property LOINC Timing LOINC System LOINC Scale LOINC Method Q fever IgG Ab For quantitative reporting in units/ml Blood/Serum U/mL Coxiella burnetii Ab.IgG ACnc Pt Ser Qn Q fever IgG Ab For quantitative reporting in titres Blood/Serum titre Coxiella burnetii Ab.IgG Titr Pt Ser Qn Q fever IgG Ab For qualitative reporting Blood/Serum No Unit Coxiella burnetii Ab.IgG ACnc Pt Ser Ord Q fever IgM Ab For quantitative reporting in units/ml Blood/Serum U/mL Coxiella burnetii Ab.IgM ACnc Pt Ser Qn Q fever IgM Ab For quantitative reporting in titres Blood/Serum titre Coxiella burnetii Ab.IgM Titr Pt Ser Qn Q fever IgM Ab For qualitative reporting Blood/Serum No Unit Coxiella burnetii Ab.IgM ACnc Pt Ser Ord Q fever Phase 1 IgA Ab Blood/Serum titre Coxiella burnetii phase 1 Ab.IgA Titr Pt Ser Qn Q fever Phase 1 IgG Ab Blood/Serum titre Coxiella burnetii phase 1 Ab.IgG Titr Pt Ser Qn Q fever Phase 1 IgM Ab Blood/Serum titre Coxiella burnetii phase 1 Ab.IgM Titr Pt Ser Qn Q fever Phase 1 Total Blood/Serum titre Coxiella burnetii phase 1 Ab Titr Pt Ser Qn Q fever Phase 2 IgA Ab Blood/Serum titre Coxiella burnetii phase 2 Ab.IgA Titr Pt Ser Qn Q fever Phase 2 IgG Ab Blood/Serum titre Coxiella burnetii phase 2 Ab.IgG Titr Pt Ser Qn Q fever Phase 2 IgM Ab Blood/Serum titre Coxiella burnetii phase 2 Ab.IgM Titr Pt Ser Qn Q fever Phase 2 Total Blood/Serum titre Coxiella burnetii phase 2 Ab Titr Pt Ser Qn Q fever Total Blood/Serum titre Coxiella burnetii Ab Titr Pt Ser Qn Q fever Total For qualitative reporting Blood/Serum No Unit Coxiella burnetii Ab ACnc Pt Ser Ord Rickettsia australis Total Ab Blood/Serum titre Rickettsia australis Ab Titr Pt Ser Qn Rickettsia conorii IgG Ab Blood/Serum titre Rickettsia conorii Ab.IgG Titr Pt Ser Qn Rickettsia conorii IgM Ab Blood/Serum titre Rickettsia conorii Ab.IgM Titr Pt Ser Qn Rickettsia conorii Total Ab Blood/Serum titre Rickettsia conorii Ab Titr Pt Ser Qn Rickettsia prowazekii IgG Ab Blood/Serum titre Rickettsia prowazekii Ab.IgG Titr Pt Ser Qn Rickettsia prowazekii IgM Ab Blood/Serum titre Rickettsia prowazekii Ab.IgM Titr Pt Ser Qn Rickettsia prowazekii Total Ab Blood/Serum titre Rickettsia prowazekii Ab Titr Pt Ser Qn Rickettsia rickettsii Total Ab Blood/Serum titre Rickettsia rickettsii Ab Titr Pt Ser Qn Rickettsia typhi IgG Ab Blood/Serum titre Rickettsia typhi Ab.IgG Titr Pt Ser Qn Rickettsia typhi IgM Ab Blood/Serum titre Rickettsia typhi Ab.IgM Titr Pt Ser Qn Rickettsia typhi Total Ab Blood/Serum titre Rickettsia typhi Ab Titr Pt Ser Qn Ross River virus IgG Ab Blood/Serum No Unit Ross river virus Ab.IgG ACnc Pt Ser Ord Ross River virus IgM Ab Blood/Serum No Unit Ross river virus Ab.IgM ACnc Pt Ser Ord Ross River virus Total Ab Blood/Serum No Unit Ross river virus Ab ACnc Pt Ser Ord Rotavirus Ag stool For qualitative reporting with agglutination assays Stool No Unit Rotavirus Ag ACnc Pt Stool Ord Aggl Rotavirus Ag stool For qualitative reporting with immuno assays Stool Rotavirus Ag ACnc Pt Stool Ord EIA Rotavirus RNA Any No Unit Rotavirus RNA ACnc Pt XXX Ord Probe.amp.tar RPR RPR Blood/Serum No Unit Reagin Ab ACnc Pt Ser Ord RPR RPR RPR Blood/Serum titre Reagin Ab Titr Pt Ser Qn RPR RSV Ag ICT For qualitative reporting with immunochromatographic test Any No Unit Respiratory syncytial virus Ag ACnc Pt XXX Ord RSV Ag IFA For qualitative reporting with immunofluorescence method Any No Unit Respiratory syncytial virus Ag ACnc Pt XXX Ord IF Rubella Ab IgG avidity Blood/Serum % Rubella virus Ab.IgG avidity Ratio Pt Ser Qn EIA Rubella IgG Ab For qualitative reporting Blood/Serum No Unit Rubella virus Ab.IgG ACnc Pt Ser Ord Rubella IgG Ab Blood/Serum IU/mL Rubella virus Ab.IgG ACnc Pt Ser Qn Rubella IgM Ab Blood/Serum No Unit Rubella virus Ab.IgM ACnc Pt Ser Ord Rubella Total Ab Blood/Serum No Unit Rubella virus Ab ACnc Pt Ser Ord Salmonella paratyphi AH Ab Blood/Serum titre Salmonella paratyphi A H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi AO Ab Blood/Serum titre Salmonella paratyphi A O Ab Titr Pt Ser Qn Aggl Salmonella paratyphi BH Ab Blood/Serum titre Salmonella paratyphi B H Ab Titr Pt Ser Qn Aggl Salmonella paratyphi BO Ab Blood/Serum titre Salmonella paratyphi B O Ab Titr Pt Ser Qn Aggl Salmonella typhi H Ab Blood/Serum titre Salmonella typhi H Ab Titr Pt Ser Qn Aggl Salmonella typhi O Ab Blood/Serum titre Salmonella typhi O Ab Titr Pt Ser Qn Aggl Schistosoma IgG Ab Blood/Serum U/mL Schistosoma sp Ab.IgG ACnc Pt Ser Qn Schistosoma IgG Ab Blood/Serum No Unit Schistosoma sp Ab.IgG ACnc Pt Ser Ord Schistosoma total Ab Blood/Serum titre Schistosoma sp Ab Titr Pt Ser Qn Sindbis virus total Ab Blood/Serum titre Sindbis virus Ab Titr Pt Ser Qn Spotted fever group IgG Ab Blood/Serum titre Rickettsia spotted fever group Ab.IgG Titr Pt Ser Qn Spotted fever group IgM Ab Blood/Serum titre Rickettsia spotted fever group Ab.IgM Titr Pt Ser Qn Spotted fever group total Ab Blood/Serum titre Rickettsia spotted fever group Ab Titr Pt Ser Qn Streptococcus AntiDNase B Ab Blood/Serum titre DNAse B Ab.Streptococcal Titr Pt Ser Qn Streptococcus AntiDNase B Ab Blood/Serum U/mL DNAse B Ab.Streptococcal ACnc Pt Ser Qn Streptococcus O Ab ASOT For quantitative reporting in units/ml Blood/Serum IU/mL Streptolysin O Ab ACnc Pt Ser Qn Streptococcus O Ab ASOT For qualitative reporting Blood/Serum No Unit Streptolysin O Ab ACnc Pt Ser Ord Streptococcus O Ab ASOT For quantitative reporting in titres Blood/Serum titre Streptolysin O Ab Titr Pt Ser Qn Toxoplasma gondii Ab IgG avidity Blood/Serum % Toxoplasma gondii Ab.IgG avidity Ratio Pt Ser Qn EIA Toxoplasmosis IgA Ab Blood/Serum U/mL Toxoplasma gondii Ab.IgA ACnc Pt Ser Qn Toxoplasmosis IgA Ab For qualitative reporting Blood/Serum No Unit Toxoplasma gondii Ab.IgA ACnc Pt Ser Ord Toxoplasmosis IgG Ab Blood/Serum No Unit Toxoplasma gondii Ab.IgG ACnc Pt Ser Ord Toxoplasmosis IgG Ab For quantitative reporting in titres Blood/Serum titre Toxoplasma gondii Ab.IgG Titr Pt Ser Qn Toxoplasmosis IgG Ab For quantitative reporting in units/ml Blood/Serum IU/mL Toxoplasma gondii Ab.IgG ACnc Pt Ser Qn Toxoplasmosis IgM Ab For qualitative reporting Blood/Serum No Unit Toxoplasma gondii Ab.IgM ACnc Pt Ser Ord Toxoplasmosis IgM Ab Blood/Serum U/mL Toxoplasma gondii Ab.IgM ACnc Pt Ser Qn Treponema pallidum Ab All agglutination tests including TPHA Blood/Serum No Unit Treponema pallidum Ab ACnc Pt Ser Ord Aggl Treponema pallidum DNA Any No Unit Treponema pallidum DNA ACnc Pt XXX Ord Probe.amp.tar Treponema pallidum FTA Ab Blood/Serum No Unit Treponema pallidum Ab ACnc Pt Ser Ord IF Treponema pallidum FTA IgM Ab Blood/Serum No Unit Treponema pallidum Ab.IgM ACnc Pt Ser Ord IF Treponema pallidum IgM Ab Blood/Serum No Unit Treponema pallidum Ab.IgM ACnc Pt Ser Ord Treponema pallidum immunoblot Blood/Serum No Unit Treponema pallidum Ab ACnc Pt Ser Ord IB Treponema pallidum Total Ab Blood/Serum No Unit Treponema pallidum Ab ACnc Pt Ser Ord Typhus group IgG Ab Blood/Serum titre Rickettsia typhus group Ab.IgG Titr Pt Ser Qn Page 5 of 6